CATdb contains data on  113 projects  (3594 hybridized samples)  in public access out of a total of 206 projects (~8876 hybridized samples). The data are released one year after their production.

You can access data by experiment or by probe through:

• A table of all projects.

• Keywords search on experiment description.

• Gene or probe accession query.

More information to explore CATdb

CATdb collects together all the information on transcriptome experiments done at   URGV  with   CATMA  micro arrays  

All data in CATdb come from the URGV micro array platforms. Common procedures are used including any steps from the experiment design to the statistical analyses. Directed through a WEB interface, biologists enter the standard description of each experimental step (extraction, labelling, hybridization and scanning). Then, normalization and statistical analyses are done following a set of selected methods depending on the experimental design and array types (More on statistical analyses for CATMA).

CATdb contains many links to  , a database for the functional analysis of plant genomes that graphically displays a wide range of Arabidopsis genome annotations including complete information concerning micro array probes.

More information on CATdb database

All data in CATdb can be downloaded from a FTP site at address:  ftp://urgv.evry.inra.fr/CATdb/
- folder data_norm contains Normalized data (text files)
- folder gpr_cel contains Raw data (gzipped archive files)
- folder GEO contains data in the SOFT format that are exported to the NCBI-Gene Expression Omnibus (gzipped files)

How to cite CATdb ?
See 39 bibliographic references related to CATdb projects...

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CATdb contacts: for any problems, questions or comments you can send an Email to catdbstaff@evry.inra.fr

Bioinformatics team in charge of CATdb: Séverine Gagnot, Jean-Philippe Tamby, Marie-Laure Martin-Magniette, Sébastien Aubourg, Véronique Brunaud and Alain Lecharny.

Two biologist teams are responsible for the submission of data: Jean-Pierre Renou for the CATMA and SAP platforms and Sandrine Balzergue for the AFFYMETRIX platform.